Description

Module to subset AnnData object to cells with matching barcodes from the csv file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

h5ad:file

Anndata object as H5AD file

*.h5ad

barcodes:file

CSV file containing barcodes. Barcodes are written in plain text. One column, no header

*.csv

Output

name:type
description
pattern

h5ad

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.h5ad

*.h5ad:file

AnnData file containing all cells with barcodes that match those in the input barcodes csv file

*.h5ad

versions

versions.yml:file

File containing software versions

versions.yml