Description

Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

h5ad:file

H5AD file of anndata object

*.h5ad

size_type:string

either ‘cells’, ‘genes’, ‘obs’, or ‘var’

Output

name:type
description
pattern

size

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.txt:file

text file containing the requested size

*.txt

versions

versions.yml:file

File containing software versions

versions.yml